Package fr.ens.biologie.genomique.aozan.aozan3

Class SequencerNames

java.lang.Object

fr.ens.biologie.genomique.aozan.aozan3.SequencerNames

public class SequencerNames
extends Object

This class allow to define names for sequencers.

Since:

3.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
SequencerNames(Configuration conf)	Constructor.

Method Summary

Modifier and Type	Method	Description
void	addSequencerName(String sn, String name)	Add a sequencer.
void	addSequencersFromConfiguration(Configuration conf)	Add sequencers in the aliases table from a configuration object.
String	getIlluminaSequencerName(RunId runId)	Get the name of an Illumina sequencer from a runId.
String	getNameFromSerialNumber(String sn)	Get the name of a sequencer from its serial number.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

SequencerNames

public SequencerNames(Configuration conf)

Constructor.

Parameters:

conf - the configuration

Method Detail

addSequencerName

public void addSequencerName(String sn,
                             String name)

Add a sequencer.

Parameters:

sn - serial number

name - name of the sequencer

getNameFromSerialNumber

public String getNameFromSerialNumber(String sn)

Get the name of a sequencer from its serial number.

Parameters:

sn - serial number

Returns:

the name of the sequencer or the serial number if the serial number is unknown

getIlluminaSequencerName

public String getIlluminaSequencerName(RunId runId)

Get the name of an Illumina sequencer from a runId.

Parameters:

runId - a run Id

Returns:

the name of the sequencer or the serial number if the serial number is unknown

addSequencersFromConfiguration

public void addSequencersFromConfiguration(Configuration conf)

Add sequencers in the aliases table from a configuration object.

Parameters:

conf - the configuration