Package fr.ens.biologie.genomique.aozan.collectors

Class DemultiplexStatsCollector

java.lang.Object

fr.ens.biologie.genomique.aozan.collectors.DemultiplexingCollector

fr.ens.biologie.genomique.aozan.collectors.DemultiplexStatsCollector

All Implemented Interfaces:

Collector

public class DemultiplexStatsCollector
extends DemultiplexingCollector

This collector parse Demultiplex_Stats.csv file generated by bcl-convert.

Since:

3.0

Author:

Laurent Jourdren

Field Summary

Fields inherited from class fr.ens.biologie.genomique.aozan.collectors.DemultiplexingCollector

COLLECTOR_NAME, PREFIX

Constructor Summary

Constructors

Constructor	Description
DemultiplexStatsCollector()

Method Summary

Modifier and Type	Method	Description
void	collect(RunData data)	Collect data.
void	configure(QC qc, CollectorConfiguration conf)	Configure the collector with the path of the run data.

Methods inherited from class fr.ens.biologie.genomique.aozan.collectors.DemultiplexingCollector

clear, getCollectorsNamesRequiered, getName, isSummaryCollector

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DemultiplexStatsCollector

public DemultiplexStatsCollector()

Method Detail

configure

public void configure(QC qc,
                      CollectorConfiguration conf)

Description copied from interface: Collector

Configure the collector with the path of the run data.

Specified by:

configure in interface Collector

Overrides:

configure in class DemultiplexingCollector

Parameters:

qc - QC object for the run

conf - the collector configuration

collect

public void collect(RunData data)
             throws AozanException

Description copied from interface: Collector

Collect data.

Specified by:

collect in interface Collector

Overrides:

collect in class DemultiplexingCollector

Parameters:

data - result data object

Throws:

AozanException - if an error occurs while collecting data