Uses of Class
fr.ens.biologie.genomique.aozan.fastqscreen.FastqScreenResult
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Packages that use FastqScreenResult Package Description fr.ens.biologie.genomique.aozan.fastqscreen This package contains a module fastqscreen for the contamination detection in each sample of a run. -
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Uses of FastqScreenResult in fr.ens.biologie.genomique.aozan.fastqscreen
Methods in fr.ens.biologie.genomique.aozan.fastqscreen that return FastqScreenResult Modifier and Type Method Description FastqScreenResult
FastqScreen. execute(File fastqRead1, File fastqRead2, String sampleDescription, List<String> genomes, String sampleGenome, boolean isPairedMode)
Mode single-end : execute fastqscreen.FastqScreenResult
FastqScreen. execute(File fastqRead, String sampleDescription, List<String> genomes, String genomeSample, boolean paired)
Mode pair-end : execute fastqscreen.FastqScreenResult
FastqScreenPseudoMapReduce. getFastqScreenResult()
Compile data of fastqscreen in percentage.
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