RecoverablePFClusterCountSampleTest (Aozan 3.1 API)

java.lang.Object
- fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest
- - fr.ens.biologie.genomique.aozan.tests.sample.AbstractSimpleSampleTest
  - - fr.ens.biologie.genomique.aozan.tests.sample.RecoverablePFClusterCountSampleTest

All Implemented Interfaces:

AozanTest, SampleTest
```
public class RecoverablePFClusterCountSampleTest
extends AbstractSimpleSampleTest
```
This class define a recoverable passing filter clusters count test for samples.

Since:

1.3

Author:

Laurent Jourdren

Constructor Summary

Constructors
Constructor Description

RecoverablePFClusterCountSampleTest()
Public constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`List<String>`	`getCollectorsNamesRequiered()`	Get the name of the collectors required for the test.
`protected String`	`getKey(int read, int readSample, int sampleId, int lane, boolean undetermined)`	Get the the key in the RunData object for the value to test.
`protected Class<?>`	`getValueType()`	Get the type of the value.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.sample.AbstractSimpleSampleTest
configure, isValuePercent, test, transformScore, transformValue

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest
getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - RecoverablePFClusterCountSampleTest
```
public RecoverablePFClusterCountSampleTest()
```
    Public constructor.
- Method Detail
  - getCollectorsNamesRequiered
```
public List<String> getCollectorsNamesRequiered()
```
    Description copied from interface: AozanTest
    
    Get the name of the collectors required for the test.
    
    Returns:
    
    a list of String with the name of the required collectors
  - getKey
```
protected String getKey(int read,
                        int readSample,
                        int sampleId,
                        int lane,
                        boolean undetermined)
```
    Description copied from class: AbstractSimpleSampleTest
    
    Get the the key in the RunData object for the value to test.
    
    Specified by:
    
    getKey in class AbstractSimpleSampleTest
    
    Parameters:
    
    read - index of the read
    
    readSample - index of read without indexed reads
    
    sampleId - the id of the sample
    
    lane - sample lane
    
    undetermined - true if the sample is an undetermined sample
    
    Returns:
    
    a String with the required key
  - getValueType
```
protected Class<?> getValueType()
```
    Description copied from class: AbstractSimpleSampleTest
    
    Get the type of the value.
    
    Specified by:
    
    getValueType in class AbstractSimpleSampleTest
    
    Returns:
    
    a Class object with the type