Package fr.ens.biologie.genomique.aozan.aozan3

Class DataType

java.lang.Object

fr.ens.biologie.genomique.aozan.aozan3.DataType

public class DataType
extends Object

This class define a data type

Since:

3.0

Author:

Laurent Jourdren

Nested Class Summary

Nested Classes

Modifier and Type	Class	Description
static class	DataType.Category	Run data type.
static class	DataType.SequencingTechnology	Sequencing technology

Field Summary

Fields

Modifier and Type	Field	Description
static DataType	BCL
static DataType	FAST5_TAR
static DataType	ILLUMINA_FASTQ
static DataType	INTEROP
static DataType	PARTIAL_BCL
static DataType	PARTIAL_ILLUMINA_FASTQ
static DataType	PARTIAL_INTEROP

Constructor Summary

Constructors

Constructor	Description
DataType(DataType.Category category, DataType.SequencingTechnology technology, String type)
DataType(DataType.Category category, DataType.SequencingTechnology technology, String type, boolean logOnly, boolean partialData)

Method Summary

Modifier and Type	Method	Description
static String	checkType(String type)
boolean	equals(Object o)
DataType.Category	getCategory()	Get the category of Data.
DataType.SequencingTechnology	getSequencingTechnology()	Get the sequencing technology used for the data.
String	getType()	Get the type of the data.
int	hashCode()
boolean	isLogOnly()	Test if the run data is partial.
boolean	isPartialData()	Test if the run data is partial.
DataType	newCategory(DataType.Category category)	Create a new RunType object from the current object with a new type.
DataType	newTechnology(DataType.SequencingTechnology technology)	Create a new RunType object from the current object with a new type.
DataType	newType(String type)	Create a new RunType object from the current object with a new type.
DataType	setLogOnly(boolean logOnly)	Create a new RunType object from the current object with a new log only setting.
DataType	setPartialData(boolean partialData)	Create a new RunType object from the current object with a new partial data setting.
String	toString()

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, wait, wait, wait

Field Detail

BCL

public static final DataType BCL

PARTIAL_BCL

public static final DataType PARTIAL_BCL

INTEROP

public static final DataType INTEROP

PARTIAL_INTEROP

public static final DataType PARTIAL_INTEROP

ILLUMINA_FASTQ

public static final DataType ILLUMINA_FASTQ

PARTIAL_ILLUMINA_FASTQ

public static final DataType PARTIAL_ILLUMINA_FASTQ

FAST5_TAR

public static final DataType FAST5_TAR

Constructor Detail

DataType

public DataType(DataType.Category category,
                DataType.SequencingTechnology technology,
                String type)

DataType

public DataType(DataType.Category category,
                DataType.SequencingTechnology technology,
                String type,
                boolean logOnly,
                boolean partialData)

Method Detail

getCategory

public DataType.Category getCategory()

Get the category of Data.

Returns:

the category

getSequencingTechnology

public DataType.SequencingTechnology getSequencingTechnology()

Get the sequencing technology used for the data.

Returns:

the sequencing technology

getType

public String getType()

Get the type of the data.

Returns:

the type of the data

isPartialData

public boolean isPartialData()

Test if the run data is partial.

Returns:

true if the run is partial

isLogOnly

public boolean isLogOnly()

Test if the run data is partial.

Returns:

true if the run is partial

newCategory

public DataType newCategory(DataType.Category category)

Create a new RunType object from the current object with a new type.

Parameters:

category - the category

Returns:

a new RunType object

newTechnology

public DataType newTechnology(DataType.SequencingTechnology technology)

Create a new RunType object from the current object with a new type.

Parameters:

technology - the technology

Returns:

a new RunType object

newType

public DataType newType(String type)

Create a new RunType object from the current object with a new type.

Parameters:

type - the new type

Returns:

a new RunType object

setPartialData

public DataType setPartialData(boolean partialData)

Create a new RunType object from the current object with a new partial data setting.

Parameters:

partialData - the new partial data value

Returns:

a new RunType object

setLogOnly

public DataType setLogOnly(boolean logOnly)

Create a new RunType object from the current object with a new log only setting.

Parameters:

logOnly - the new log only value

Returns:

a new RunType object

toString

public String toString()

Overrides:

toString in class Object

hashCode

public int hashCode()

Overrides:

hashCode in class Object

equals

public boolean equals(Object o)

Overrides:

equals in class Object

checkType

public static String checkType(String type)