Uses of Class
fr.ens.biologie.genomique.aozan.QC
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Packages that use QC Package Description fr.ens.biologie.genomique.aozan Root package of Aozan.fr.ens.biologie.genomique.aozan.collectors This package defines the collectors which collects data for a run.fr.ens.biologie.genomique.aozan.io This package contains general I/O classes for Aozan. -
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Uses of QC in fr.ens.biologie.genomique.aozan
Methods in fr.ens.biologie.genomique.aozan with parameters of type QC Modifier and Type Method Description RunData
RunDataGenerator. collect(QC qc)
Collect data and return a RunData object. -
Uses of QC in fr.ens.biologie.genomique.aozan.collectors
Methods in fr.ens.biologie.genomique.aozan.collectors with parameters of type QC Modifier and Type Method Description void
AbstractFastqCollector. configure(QC qc, CollectorConfiguration conf)
void
AozanCollector. configure(QC qc, CollectorConfiguration conf)
void
Collector. configure(QC qc, CollectorConfiguration conf)
Configure the collector with the path of the run data.void
DemultiplexingCollector. configure(QC qc, CollectorConfiguration conf)
void
DemultiplexStatsCollector. configure(QC qc, CollectorConfiguration conf)
void
FastQCCollector. configure(QC qc, CollectorConfiguration conf)
void
FastqScreenCollector. configure(QC qc, CollectorConfiguration conf)
void
GlobalStatsCollector. configure(QC qc, CollectorConfiguration conf)
void
MultiQCCollector. configure(QC qc, CollectorConfiguration conf)
void
PrimaryAnalysisMetricsCollector. configure(QC qc, CollectorConfiguration conf)
void
ReadCollector. configure(QC qc, CollectorConfiguration conf)
void
RunInfoCollector. configure(QC qc, CollectorConfiguration conf)
void
SamplesheetCollector. configure(QC qc, CollectorConfiguration conf)
void
StatisticsCollector. configure(QC qc, CollectorConfiguration conf)
void
SubsetFastqCollector. configure(QC qc, CollectorConfiguration conf)
void
UndeterminedIndexesCollector. configure(QC qc, CollectorConfiguration conf)
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Uses of QC in fr.ens.biologie.genomique.aozan.io
Methods in fr.ens.biologie.genomique.aozan.io with parameters of type QC Modifier and Type Method Description static Set<FastqSample>
FastqSampleUtils. createListFastqSamples2(QC qc, RunData data, boolean processStandardSamples, boolean processUndeterminedSamples, boolean processOnlyFirstRead)
Create a set of FastqSample to process.Constructors in fr.ens.biologie.genomique.aozan.io with parameters of type QC Constructor Description FastqSample(QC qc, int sampleId, int read, int lane)
Public constructor corresponding of a undetermined index sample.FastqSample(QC qc, int sampleId, int read, int lane, String sampleDirname, String sampleName, String projectName, String descriptionSample, String index)
Public constructor corresponding of a technical replica sample.
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