Uses of Class
fr.ens.biologie.genomique.aozan.Settings
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Packages that use Settings Package Description fr.ens.biologie.genomique.aozan Root package of Aozan.fr.ens.biologie.genomique.aozan.aozan3.dataprocessor fr.ens.biologie.genomique.aozan.fastqscreen This package contains a module fastqscreen for the contamination detection in each sample of a run.fr.ens.biologie.genomique.aozan.tests This package contains class of tests which defines the collector to launch and creates a report of a quality control. -
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Uses of Settings in fr.ens.biologie.genomique.aozan
Methods in fr.ens.biologie.genomique.aozan that return Settings Modifier and Type Method Description Settings
QC. getSettings()
Get Aozan settings.Constructors in fr.ens.biologie.genomique.aozan with parameters of type Settings Constructor Description QC(Settings settings, String bclDir, String fastqDir, String qcDir, File tmpDir, String runId)
Public constructor.QC(Settings settings, String bclDir, String fastqDir, String qcDir, File tmpDir, String runId, fr.ens.biologie.genomique.kenetre.illumina.samplesheet.SampleSheet sampleSheet)
Public constructor.QC(Settings settings, String bclDir, String fastqDir, String qcDir, String tmpDirname, String runId)
Public constructor. -
Uses of Settings in fr.ens.biologie.genomique.aozan.aozan3.dataprocessor
Methods in fr.ens.biologie.genomique.aozan.aozan3.dataprocessor that return Settings Modifier and Type Method Description static Settings
Aozan2Compatibility. runConfigurationToSettings(RunConfiguration runConfiguration)
Convert an Azoan 3 RunConfiguration object to an Aozan 2 Settings object. -
Uses of Settings in fr.ens.biologie.genomique.aozan.fastqscreen
Methods in fr.ens.biologie.genomique.aozan.fastqscreen with parameters of type Settings Modifier and Type Method Description static void
GenomeAliases. initialize(Settings settings)
Create a instance of GenomeAliases or if it exists return instance. -
Uses of Settings in fr.ens.biologie.genomique.aozan.tests
Constructors in fr.ens.biologie.genomique.aozan.tests with parameters of type Settings Constructor Description TestConfiguration(Settings settings, String prefix, Map<String,String> globalConf)
Public constructor.
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