Package fr.ens.biologie.genomique.aozan.tests

Class TestConfiguration

java.lang.Object

fr.ens.biologie.genomique.aozan.tests.TestConfiguration

public class TestConfiguration
extends Object

This class define the configuration of a test.

Since:

2.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
TestConfiguration(Settings settings, String prefix, Map<String,String> globalConf)	Public constructor.
TestConfiguration(Map<String,String> map)	Public constructor.

Method Summary

Modifier and Type	Method	Description
boolean	containsKey(String key)	Test if the configuration contains a key.
Set<Map.Entry<String,String>>	entrySet()	Get an entry set of the setting values.
String	get(String key)	Get a setting value.
fr.ens.biologie.genomique.kenetre.illumina.samplesheet.SampleSheet	getSampleSheet(String key)	Get a sample sheet.
boolean	isEmpty()	Test if the configuration is empty.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

TestConfiguration

public TestConfiguration(Settings settings,
                         String prefix,
                         Map<String,String> globalConf)

Public constructor.

Parameters:

settings - Aozan settings

prefix - test prefix

globalConf - global configuration

TestConfiguration

public TestConfiguration(Map<String,String> map)

Public constructor.

Parameters:

map - Collector configuration

Method Detail

get

public String get(String key)

Get a setting value.

Parameters:

key - the setting key

Returns:

the value of the setting

getSampleSheet

public fr.ens.biologie.genomique.kenetre.illumina.samplesheet.SampleSheet getSampleSheet(String key)

Get a sample sheet.

Parameters:

key - the setting key

Returns:

the sample sheet in the configuration or an empty sample sheet

containsKey

public boolean containsKey(String key)

Test if the configuration contains a key.

Parameters:

key - the key to test

Returns:

true if the configuration contains the key

entrySet

public Set<Map.Entry<String,String>> entrySet()

Get an entry set of the setting values.

Returns:

an entry set of the settings

isEmpty

public boolean isEmpty()

Test if the configuration is empty.

Returns:

true if the configuration is empty

toString

public String toString()

Overrides:

toString in class Object