Uses of Class
fr.ens.biologie.genomique.aozan.tests.TestConfiguration
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Packages that use TestConfiguration Package Description fr.ens.biologie.genomique.aozan.fastqscreen This package contains a module fastqscreen for the contamination detection in each sample of a run.fr.ens.biologie.genomique.aozan.tests This package contains class of tests which defines the collector to launch and creates a report of a quality control.fr.ens.biologie.genomique.aozan.tests.global This package contains class of global tests which defines the collector to launch and creates a report of a quality control.fr.ens.biologie.genomique.aozan.tests.lane This package contains class of lane tests which defines the collector to launch and creates a report of a quality control.fr.ens.biologie.genomique.aozan.tests.pooledsample This package contains class of project tests which defines the collector to launch and creates a report of a quality control.fr.ens.biologie.genomique.aozan.tests.project This package contains class of project tests which defines the collector to launch and creates a report of a quality control.fr.ens.biologie.genomique.aozan.tests.sample This package contains class of sample tests which defines the collector to launch and creates a report of a quality control.fr.ens.biologie.genomique.aozan.util This package utility classes. -
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Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.fastqscreen
Methods in fr.ens.biologie.genomique.aozan.fastqscreen with parameters of type TestConfiguration Modifier and Type Method Description static FastqScreenGenomes
FastqScreenGenomes. newInstance(TestConfiguration testConfiguration)
Private constructor of FastqScreenGenomeMapper. -
Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.tests
Methods in fr.ens.biologie.genomique.aozan.tests with parameters of type TestConfiguration Modifier and Type Method Description List<AozanTest>
AozanTest. configure(TestConfiguration conf)
Configure the test. -
Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.tests.global
Methods in fr.ens.biologie.genomique.aozan.tests.global with parameters of type TestConfiguration Modifier and Type Method Description List<AozanTest>
AbstractSimpleGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
ClusterDensityGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
ClusterDensityPFGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
ErrorRateGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
OccupancyPercentGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
ProjectCountGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
Q30PercentGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
SampleCountGlobalTest. configure(TestConfiguration conf)
List<AozanTest>
UndeterminedClusterPercentGlobalTest. configure(TestConfiguration conf)
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Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.tests.lane
Methods in fr.ens.biologie.genomique.aozan.tests.lane with parameters of type TestConfiguration Modifier and Type Method Description List<AozanTest>
AbstractSimpleLaneTest. configure(TestConfiguration conf)
List<AozanTest>
PFClusterPercentLaneTest. configure(TestConfiguration conf)
List<AozanTest>
PhasingPrephasingPercentLaneTest. configure(TestConfiguration conf)
List<AozanTest>
PhiXAlignPercentLaneTest. configure(TestConfiguration oonf)
List<AozanTest>
PhiXRawClusterCountLaneTest. configure(TestConfiguration conf)
List<AozanTest>
Q30PercentLaneTest. configure(TestConfiguration conf)
List<AozanTest>
YieldLaneTest. configure(TestConfiguration conf)
List<AozanTest>
YieldPFLaneTest. configure(TestConfiguration conf)
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Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.tests.pooledsample
Methods in fr.ens.biologie.genomique.aozan.tests.pooledsample with parameters of type TestConfiguration Modifier and Type Method Description List<AozanTest>
AbstractSimpleSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQScreenMappedPercentPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQScreenReportPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQScreenSampleOvercontaminationCountPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
InProjectPercentPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
InRunPercentPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
PFBaseMeanQualityScorePooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
PFPercentPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
Q30PercentPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
RecoverablePFClusterPercentPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
RecoverableRawClusterPercentPooledSampleTest. configure(TestConfiguration conf)
List<AozanTest>
SampleInPoolCountPooledSampleTest. configure(TestConfiguration conf)
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Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.tests.project
Methods in fr.ens.biologie.genomique.aozan.tests.project with parameters of type TestConfiguration Modifier and Type Method Description List<AozanTest>
AbstractSimpleProjectTest. configure(TestConfiguration conf)
List<AozanTest>
FastQScreenReportProjectTest. configure(TestConfiguration conf)
List<AozanTest>
MultiQCReportProjectTest. configure(TestConfiguration conf)
List<AozanTest>
RecoverablePFClusterPercentProjectTest. configure(TestConfiguration conf)
List<AozanTest>
RecoverableRawClusterPercentProjectTest. configure(TestConfiguration conf)
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Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.tests.sample
Methods in fr.ens.biologie.genomique.aozan.tests.sample with parameters of type TestConfiguration Modifier and Type Method Description List<AozanTest>
AbstractSimpleSampleTest. configure(TestConfiguration conf)
List<AozanTest>
BasePFMeanQualityScoreSampleTest. configure(TestConfiguration conf)
List<AozanTest>
ClusterRecoveryReportSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCAdapterContentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCBasicStatsSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCDuplicationLevelSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCKmerContentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCNContentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCOverrepresentedSequencesSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCPerBaseQualityScoresSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCPerBaseSequenceContentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCPerSequenceGCContentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCPerSequenceQualityScoresSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCPerTileSequenceQualitySampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQCSequenceLengthDistributionSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQScreenMappedPercentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
FastQScreenReportSampleTest. configure(TestConfiguration conf)
List<AozanTest>
InLanePercentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
PFPercentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
Q30PercentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
RecoverablePFClusterPercentSampleTest. configure(TestConfiguration conf)
List<AozanTest>
RecoverableRawClusterPercentSampleTest. configure(TestConfiguration conf)
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Uses of TestConfiguration in fr.ens.biologie.genomique.aozan.util
Methods in fr.ens.biologie.genomique.aozan.util with parameters of type TestConfiguration Modifier and Type Method Description void
ScoreInterval. configureDoubleInterval(TestConfiguration conf)
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