Package fr.ens.biologie.genomique.aozan.tests.global
This package contains class of global tests which defines the collector to
launch and creates a report of a quality control.
- Since:
- 1.3
-
Interface Summary Interface Description GlobalTest This interface define a test on lane. -
Class Summary Class Description AbstractGlobalTest This class define a abstract Global test.AbstractSimpleGlobalTest This class define a simple global test.BaseCountGlobalTest This class define a base count global test.ClusterDensityGlobalTest The class define test to compute the density cluster mean for the run.ClusterDensityPFGlobalTest The class define test to compute the density cluster mean passing filtre for the run.CycleCountGlobalTest This class define a cycle count global test.ErrorRateGlobalTest The class define test to compute the mean on the error rate phix for the run.LaneCountGlobalTest This class define a lane count global test.LoadingConcentrationPercentGlobalTest This class define a loading concentration percent global test.MeanPFClusterCountGlobalTest This class define a raw cluster mean global test.MeanPhiXRawClusterCountGlobalTest This class define a raw cluster phix mean global test.MeanRawClusterCountGlobalTest This class define a raw cluster global test.MedianPFClusterCountGlobalTest This class define a raw cluster mediane global test.MedianPhiXRawClusterCountGlobalTest This class define a raw cluster phix mediane global test.MedianRawClusterCountGlobalTest This class define a raw cluster mediane global test.NonIndexedBaseCountGlobalTest This class define a non indexed base count global test.OccupancyPercentGlobalTest This class define an occupancy percent global test.PFClusterCountGlobalTest This class define a Passing Filter cluster global test.PFClusterPercentGlobalTest This class define a percent passing filter clusters global test.PFClusterSDGlobalTest This class define a raw cluster standard deviation global test.PhiXAlignPercentGlobalTest This class define a lane test on PhiX percent aligned.PhiXRawClusterCountGlobalTest This class define a raw cluster phix count global test.PhiXRawClusterSDGlobalTest This class define a raw cluster phix standard deviation global test.ProjectCountGlobalTest This class define a projects count global test.Q30PercentGlobalTest This class define a Q30 percent global test.RawClusterCountGlobalTest This class define a raw cluster global test.RawClusterSDGlobalTest This class define a raw cluster standard deviation global test.SampleCountGlobalTest This class define a samples count global test.UndeterminedClusterPercentGlobalTest This class define a projects count global test.