Package fr.ens.biologie.genomique.aozan.tests.global

Class PhiXAlignPercentGlobalTest

java.lang.Object

fr.ens.biologie.genomique.aozan.tests.global.AbstractGlobalTest

fr.ens.biologie.genomique.aozan.tests.global.AbstractSimpleGlobalTest

fr.ens.biologie.genomique.aozan.tests.global.PhiXAlignPercentGlobalTest

All Implemented Interfaces:

AozanTest, GlobalTest

public class PhiXAlignPercentGlobalTest
extends AbstractSimpleGlobalTest

This class define a lane test on PhiX percent aligned.

Since:

1.3

Author:

Sandrine Perrin

Constructor Summary

Constructors

Constructor	Description
PhiXAlignPercentGlobalTest()	Public constructor.

Method Summary

Modifier and Type	Method	Description
List<String>	getCollectorsNamesRequiered()	Get the name of the collectors required for the test.
protected String	getKey()	Get the the key in the RunData object for the value to test.
protected Class<?>	getValueType()	Get the type of the value.
protected boolean	isValuePercent()	Test if the value is a percent.
protected Number	transformValue(Number value, RunData data)	Transform the value.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.global.AbstractSimpleGlobalTest

configure, test

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.global.AbstractGlobalTest

getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhiXAlignPercentGlobalTest

public PhiXAlignPercentGlobalTest()

Public constructor.

Method Detail

getCollectorsNamesRequiered

public List<String> getCollectorsNamesRequiered()

Description copied from interface: AozanTest

Get the name of the collectors required for the test.

Returns:

a list of String with the name of the required collectors

isValuePercent

protected boolean isValuePercent()

Description copied from class: AbstractSimpleGlobalTest

Test if the value is a percent.

Overrides:

isValuePercent in class AbstractSimpleGlobalTest

Returns:

true if the value is a percent

getKey

protected String getKey()

Description copied from class: AbstractSimpleGlobalTest

Get the the key in the RunData object for the value to test.

Specified by:

getKey in class AbstractSimpleGlobalTest

Returns:

a String with the required key

getValueType

protected Class<?> getValueType()

Description copied from class: AbstractSimpleGlobalTest

Get the type of the value.

Specified by:

getValueType in class AbstractSimpleGlobalTest

Returns:

a Class object with the type

transformValue

protected Number transformValue(Number value,
                                RunData data)

Description copied from class: AbstractSimpleGlobalTest

Transform the value.

Overrides:

transformValue in class AbstractSimpleGlobalTest

Parameters:

value - value to transform

data - run data

Returns:

the transformed value