FastQCPerSequenceQualityScoresSampleTest (Aozan 3.1 API)

java.lang.Object
- fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest
- - fr.ens.biologie.genomique.aozan.tests.sample.AbstractFastQCSampleTest
  - - fr.ens.biologie.genomique.aozan.tests.sample.FastQCPerSequenceQualityScoresSampleTest

All Implemented Interfaces:

AozanTest, SampleTest
```
public class FastQCPerSequenceQualityScoresSampleTest
extends AbstractFastQCSampleTest
```
This class define a sample test for FastQC per sequence quality scores module.

Since:

0.8

Author:

Laurent Jourdren

Constructor Summary

Constructors
Constructor Description

FastQCPerSequenceQualityScoresSampleTest()
Public constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`List<AozanTest>`	`configure(TestConfiguration conf)`	Configure the test.
`protected int`	`getHTMLAnchorIndex()`	Get the anchor index of for the module in FastQC HTML report.
`protected String`	`getQCModuleName()`	Get the name of the FastQC module.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.sample.AbstractFastQCSampleTest
getCollectorsNamesRequiered, test

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest
getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - FastQCPerSequenceQualityScoresSampleTest
```
public FastQCPerSequenceQualityScoresSampleTest()
```
    Public constructor.
- Method Detail
  - configure
```
public List<AozanTest> configure(TestConfiguration conf)
                          throws AozanException
```
    Description copied from interface: AozanTest
    
    Configure the test.
    
    Parameters:
    
    conf - the test configuration
    
    Returns:
    
    list of Aozan tests
    
    Throws:
    
    AozanException
  - getQCModuleName
```
protected String getQCModuleName()
```
    Description copied from class: AbstractFastQCSampleTest
    
    Get the name of the FastQC module.
    
    Specified by:
    
    getQCModuleName in class AbstractFastQCSampleTest
    
    Returns:
    
    the name of the FastQC module
  - getHTMLAnchorIndex
```
protected int getHTMLAnchorIndex()
```
    Description copied from class: AbstractFastQCSampleTest
    
    Get the anchor index of for the module in FastQC HTML report.
    
    Specified by:
    
    getHTMLAnchorIndex in class AbstractFastQCSampleTest
    
    Returns:
    
    the position anchor