PFClusterPercentLaneTest (Aozan 3.1 API)

java.lang.Object
- fr.ens.biologie.genomique.aozan.tests.lane.AbstractLaneTest
- - fr.ens.biologie.genomique.aozan.tests.lane.PFClusterPercentLaneTest

All Implemented Interfaces:

AozanTest, LaneTest
```
public class PFClusterPercentLaneTest
extends AbstractLaneTest
```
This class a test on passing filter cluster in a lane.

Since:

0.8

Author:

Laurent Jourdren

Constructor Summary

Constructors
Constructor Description

PFClusterPercentLaneTest()
Public constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`List<AozanTest>`	`configure(TestConfiguration conf)`	Configure the test.
`List<String>`	`getCollectorsNamesRequiered()`	Get the name of the collectors required for the test.
`TestResult`	`test(RunData data, int read, boolean indexedRead, int lane)`	Do a test.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.lane.AbstractLaneTest
getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - PFClusterPercentLaneTest
```
public PFClusterPercentLaneTest()
```
    Public constructor.
- Method Detail
  - getCollectorsNamesRequiered
```
public List<String> getCollectorsNamesRequiered()
```
    Description copied from interface: AozanTest
    
    Get the name of the collectors required for the test.
    
    Returns:
    
    a list of String with the name of the required collectors
  - test
```
public TestResult test(RunData data,
                       int read,
                       boolean indexedRead,
                       int lane)
```
    Description copied from interface: LaneTest
    
    Do a test.
    
    Parameters:
    
    data - result object
    
    read - index of read
    
    indexedRead - true if the read is an index read
    
    lane - the index of the lane
    
    Returns:
    
    a TestResult object with the result of the test
  - configure
```
public List<AozanTest> configure(TestConfiguration conf)
                          throws AozanException
```
    Description copied from interface: AozanTest
    
    Configure the test.
    
    Parameters:
    
    conf - the test configuration
    
    Returns:
    
    list of Aozan tests
    
    Throws:
    
    AozanException