Package fr.ens.biologie.genomique.aozan.tests.lane

Interface LaneTest

All Superinterfaces:

AozanTest

All Known Implementing Classes:

AbstractLaneTest, AbstractSimpleLaneTest, ClusterDensityLaneTest, ClusterDensityPFLaneTest, Cycle100ErrorRateLaneTest, Cycle20IntensityPercentLaneTest, Cycle35ErrorRateLaneTest, Cycle75ErrorRateLaneTest, DensityLaneTest, ErrorRateLaneTest, FirstCycleIntensityLaneTest, OccupancyPercentLaneTest, PFClusterCountLaneTest, PFClusterPercentLaneTest, PhasingPrephasingPercentLaneTest, PhiXAlignPercentLaneTest, PhiXRawClusterCountLaneTest, Q30PercentLaneTest, RawClusterCountLaneTest, YieldLaneTest, YieldPFLaneTest

public interface LaneTest
extends AozanTest

This interface define a test on lane.

Since:

0.8

Author:

Laurent Jourdren

Method Summary

Modifier and Type	Method	Description
TestResult	test(RunData data, int read, boolean indexedRead, int lane)	Do a test.

Methods inherited from interface fr.ens.biologie.genomique.aozan.tests.AozanTest

configure, getCollectorsNamesRequiered, getColumnName, getDescription, getName, getUnit, init

Method Detail

test

TestResult test(RunData data,
                int read,
                boolean indexedRead,
                int lane)

Do a test.

Parameters:

data - result object

read - index of read

indexedRead - true if the read is an index read

lane - the index of the lane

Returns:

a TestResult object with the result of the test