Package fr.ens.biologie.genomique.aozan.tests.lane

Class PhiXRawClusterCountLaneTest

java.lang.Object

fr.ens.biologie.genomique.aozan.tests.lane.AbstractLaneTest

fr.ens.biologie.genomique.aozan.tests.lane.PhiXRawClusterCountLaneTest

All Implemented Interfaces:

AozanTest, LaneTest

public class PhiXRawClusterCountLaneTest
extends AbstractLaneTest

This class define a lane test on PhiX raw cluster count.

Since:

1.3

Author:

Sandrine Perrin

Constructor Summary

Constructors

Constructor	Description
PhiXRawClusterCountLaneTest()	Public constructor.

Method Summary

Modifier and Type	Method	Description
List<AozanTest>	configure(TestConfiguration conf)	Configure the test.
List<String>	getCollectorsNamesRequiered()	Get the name of the collectors required for the test.
TestResult	test(RunData data, int read, boolean indexedRead, int lane)	Do a test.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.lane.AbstractLaneTest

getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

PhiXRawClusterCountLaneTest

public PhiXRawClusterCountLaneTest()

Public constructor.

Method Detail

getCollectorsNamesRequiered

public List<String> getCollectorsNamesRequiered()

Description copied from interface: AozanTest

Get the name of the collectors required for the test.

Returns:

a list of String with the name of the required collectors

test

public TestResult test(RunData data,
                       int read,
                       boolean indexedRead,
                       int lane)

Description copied from interface: LaneTest

Do a test.

Parameters:

data - result object

read - index of read

indexedRead - true if the read is an index read

lane - the index of the lane

Returns:

a TestResult object with the result of the test

configure

public List<AozanTest> configure(TestConfiguration conf)
                          throws AozanException

Description copied from interface: AozanTest

Configure the test.

Parameters:

conf - the test configuration

Returns:

list of Aozan tests

Throws:

AozanException