Package fr.ens.biologie.genomique.aozan.tests.lane

This package contains class of lane tests which defines the collector to launch and creates a report of a quality control.

Since:

1.3

Interface Summary

Interface	Description
LaneTest	This interface define a test on lane.

Class Summary

Class	Description
AbstractLaneTest	This class define a abstract Lane test.
AbstractSimpleLaneTest	This class define a simple lane test.
ClusterDensityLaneTest	This class define a lane test on cluster density.
ClusterDensityPFLaneTest	This class define a lane test on cluster density.
Cycle100ErrorRateLaneTest	This class define a test on error rate on 100 cycle.
Cycle20IntensityPercentLaneTest	This class define a test on percent of intensity at cycle 20.
Cycle35ErrorRateLaneTest	This class define a test on error rate on 35 cycle.
Cycle75ErrorRateLaneTest	This class define a test on error rate on 75 cycle.
DensityLaneTest	This class define a density lane test.
ErrorRateLaneTest	This class define a test on error rate.
FirstCycleIntensityLaneTest	This class define a test on first cycle intensity.
OccupancyPercentLaneTest	This class define an occupancy percent lane test.
PFClusterCountLaneTest	This class define a Passing Filter cluster lane test.
PFClusterPercentLaneTest	This class a test on passing filter cluster in a lane.
PhasingPrephasingPercentLaneTest	This class define a lane test on phasing / prephasing.
PhiXAlignPercentLaneTest	This class define a lane test on PhiX percent aligned.
PhiXRawClusterCountLaneTest	This class define a lane test on PhiX raw cluster count.
Q30PercentLaneTest	This class define a Q30 percent lane test.
RawClusterCountLaneTest	This class define a raw cluster test.
YieldLaneTest	This class define a yield lane test.
YieldPFLaneTest	This class define a yield passing filter lane test.