Class Q30PercentSampleTest

  • All Implemented Interfaces:
    AozanTest, SampleTest

    public class Q30PercentSampleTest
    extends AbstractSampleTest
    This class define a percent Q30 sample test.
    Since:
    0.8
    Author:
    Laurent Jourdren
    • Constructor Detail

      • Q30PercentSampleTest

        public Q30PercentSampleTest()
        Public constructor.
    • Method Detail

      • getCollectorsNamesRequiered

        public List<String> getCollectorsNamesRequiered()
        Description copied from interface: AozanTest
        Get the name of the collectors required for the test.
        Returns:
        a list of String with the name of the required collectors
      • test

        public TestResult test​(RunData data,
                               int read,
                               int readSample,
                               int sampleId)
        Description copied from interface: SampleTest
        Do a test.
        Parameters:
        data - result object
        read - index of read
        readSample - index of read without indexed reads
        sampleId - the sample id of the sample to test.
        Returns:
        a TestResult object with the result of the test