BasePFMeanQualityScoreSampleTest (Aozan 3.1 API)

java.lang.Object
- fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest
- - fr.ens.biologie.genomique.aozan.tests.sample.BasePFMeanQualityScoreSampleTest

All Implemented Interfaces:

AozanTest, SampleTest
```
public class BasePFMeanQualityScoreSampleTest
extends AbstractSampleTest
```
This class define a percent quality mean score sample test.

Since:

0.8

Author:

Laurent Jourdren

Constructor Summary

Constructors
Constructor Description

BasePFMeanQualityScoreSampleTest()
Public constructor.

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method	Description
`List<AozanTest>`	`configure(TestConfiguration conf)`	Configure the test.
`List<String>`	`getCollectorsNamesRequiered()`	Get the name of the collectors required for the test.
`TestResult`	`test(RunData data, int read, int readSample, int sampleId)`	Do a test.

Methods inherited from class fr.ens.biologie.genomique.aozan.tests.sample.AbstractSampleTest
getColumnName, getDescription, getName, getUnit, init

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - BasePFMeanQualityScoreSampleTest
```
public BasePFMeanQualityScoreSampleTest()
```
    Public constructor.
- Method Detail
  - getCollectorsNamesRequiered
```
public List<String> getCollectorsNamesRequiered()
```
    Description copied from interface: AozanTest
    
    Get the name of the collectors required for the test.
    
    Returns:
    
    a list of String with the name of the required collectors
  - test
```
public TestResult test(RunData data,
                       int read,
                       int readSample,
                       int sampleId)
```
    Description copied from interface: SampleTest
    
    Do a test.
    
    Parameters:
    
    data - result object
    
    read - index of read
    
    readSample - index of read without indexed reads
    
    sampleId - the sample id of the sample to test.
    
    Returns:
    
    a TestResult object with the result of the test
  - configure
```
public List<AozanTest> configure(TestConfiguration conf)
                          throws AozanException
```
    Description copied from interface: AozanTest
    
    Configure the test.
    
    Parameters:
    
    conf - the test configuration
    
    Returns:
    
    list of Aozan tests
    
    Throws:
    
    AozanException