Package fr.ens.biologie.genomique.aozan.fastqc

Class AbstractQCModuleAozan

java.lang.Object

uk.ac.babraham.FastQC.Modules.AbstractQCModule

fr.ens.biologie.genomique.aozan.fastqc.AbstractQCModuleAozan

All Implemented Interfaces:

uk.ac.babraham.FastQC.Modules.QCModule

public abstract class AbstractQCModuleAozan
extends uk.ac.babraham.FastQC.Modules.AbstractQCModule

This class replace normal class AbstracQCModule form

Since:

1.3

Author:

Sandrine Perrin

Constructor Summary

Constructors

Constructor	Description
AbstractQCModuleAozan()

Method Summary

Modifier and Type	Method	Description
protected void	writeTable(uk.ac.babraham.FastQC.Report.HTMLReportArchive report, TableModel table)
protected void	writeTextTable(uk.ac.babraham.FastQC.Report.HTMLReportArchive report, TableModel table)
protected void	writeXhtmlTable(uk.ac.babraham.FastQC.Report.HTMLReportArchive report, TableModel table)

Methods inherited from class uk.ac.babraham.FastQC.Modules.AbstractQCModule

simpleXhtmlReport, writeDefaultImage, writeSpecificImage

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.babraham.FastQC.Modules.QCModule

description, getResultsPanel, ignoreFilteredSequences, ignoreInReport, makeReport, name, processSequence, raisesError, raisesWarning, reset

Constructor Detail

AbstractQCModuleAozan

public AbstractQCModuleAozan()

Method Detail

writeTable

protected void writeTable(uk.ac.babraham.FastQC.Report.HTMLReportArchive report,
                          TableModel table)
                   throws IOException,
                          XMLStreamException

Overrides:

writeTable in class uk.ac.babraham.FastQC.Modules.AbstractQCModule

Throws:

IOException

XMLStreamException

writeXhtmlTable

protected void writeXhtmlTable(uk.ac.babraham.FastQC.Report.HTMLReportArchive report,
                               TableModel table)
                        throws IOException,
                               XMLStreamException

Overrides:

writeXhtmlTable in class uk.ac.babraham.FastQC.Modules.AbstractQCModule

Throws:

IOException

XMLStreamException

writeTextTable

protected void writeTextTable(uk.ac.babraham.FastQC.Report.HTMLReportArchive report,
                              TableModel table)
                       throws IOException

Overrides:

writeTextTable in class uk.ac.babraham.FastQC.Modules.AbstractQCModule

Throws:

IOException