Package fr.ens.biologie.genomique.aozan.fastqc

This package contains a QCModule for FastQC that list the bad tiles in a fastq file and class used for modify fastqc bytecode, it is necessary with FastQC version 0.10.1.

Since:

0.8

Class Summary

Class	Description
AbstractQCModuleAozan	This class replace normal class AbstracQCModule form
BlastContaminantHit	This class define a Blast contiminant Hit.
ContaminantFinder	Source FastQC version 0.10.0, not modify.
OverrepresentedSequencesBlast	This class launches blastn on one sequence query and parses xml result file to identify the best hit.
RuntimePatchFastQC	This class redefine methods or constructors from FastQC to provide access to files in fastqc jar.