Package fr.ens.biologie.genomique.aozan.fastqc

Class ContaminantFinder

java.lang.Object

fr.ens.biologie.genomique.aozan.fastqc.ContaminantFinder

public class ContaminantFinder
extends Object

Source FastQC version 0.10.0, not modify. The class version 0.10.1 doesn't provide access to files in fastqc jar. Use old version. Call the method instead of the true after modification of bytecode. Copyright Copyright 2010-11 Simon Andrews

Since:

1.1

Constructor Summary

Constructors

Constructor	Description
ContaminantFinder()

Method Summary

Modifier and Type	Method	Description
static uk.ac.babraham.FastQC.Sequence.Contaminant.ContaminantHit	findContaminantHit(String sequence)
static uk.ac.babraham.FastQC.Sequence.Contaminant.Contaminant[]	makeContaminantList()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ContaminantFinder

public ContaminantFinder()

Method Detail

findContaminantHit

public static uk.ac.babraham.FastQC.Sequence.Contaminant.ContaminantHit findContaminantHit(String sequence)

makeContaminantList

public static uk.ac.babraham.FastQC.Sequence.Contaminant.Contaminant[] makeContaminantList()