Package fr.ens.biologie.genomique.aozan

Class QCReport

java.lang.Object

fr.ens.biologie.genomique.aozan.QCReport

public class QCReport
extends Object

This class generate the QC Report.

Since:

0.8

Author:

Laurent Jourdren

Constructor Summary

Constructors

Constructor	Description
QCReport(QCReport report)	Copy constructor.
QCReport(RunData data, List<GlobalTest> globalTests, List<LaneTest> laneTests, List<ProjectTest> projectStatsTests, List<PooledSampleTest> samplesStatsTests, List<SampleTest> sampleTests)	Public constructor.

Method Summary

Modifier and Type	Method	Description
void	filterTests(Collection<String> testNamesToRemove)	Filter test entry in the report
RunData	getData()	Get the data.
Document	toDocument()	Get Report as a XML Document.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

QCReport

public QCReport(RunData data,
                List<GlobalTest> globalTests,
                List<LaneTest> laneTests,
                List<ProjectTest> projectStatsTests,
                List<PooledSampleTest> samplesStatsTests,
                List<SampleTest> sampleTests)

Public constructor.

Parameters:

data - Run data

globalTests - list of the global tests

laneTests - list of the read tests

projectStatsTests - the project stats tests

samplesStatsTests - the samples stats tests

sampleTests - list of the sample tests

QCReport

public QCReport(QCReport report)

Copy constructor.

Parameters:

report - report to copy

Method Detail

getData

public RunData getData()

Get the data.

Returns:

the RunData object

toDocument

public Document toDocument()
                    throws AozanException

Get Report as a XML Document.

Returns:

a XML document

Throws:

AozanException - if an error occurs while creating the report.

filterTests

public void filterTests(Collection<String> testNamesToRemove)

Filter test entry in the report

Parameters:

testNamesToRemove - name of the tests to remove