Package fr.ens.biologie.genomique.aozan.aozan3

Class RunData

java.lang.Object

fr.ens.biologie.genomique.aozan.aozan3.RunData

public class RunData
extends Object

This class define a run data.

Since:

3.0

Author:

Laurent Jourdren

Constructor Summary

Constructors

Modifier	Constructor	Description
protected	RunData()	Constructor for Gson

Method Summary

Modifier and Type	Method	Description
DataLocation	getLocation()	Get the location of the data.
RunId	getRunId()	Get run Id.
SequencerSource	getSource()	Get the source of the data (e.g.
DataType	getType()	Get the type of the data.
RunData	newCategory(DataType.Category category)	Create a new RunType object from the current object with a new category.
RunData	newLocation(DataLocation location)	Create a new RunData object from the current object with a new location.
RunData	newRunId(RunId runId)	Create a new RunData object from the current object with a new run Id.
RunData	newTechnology(DataType.SequencingTechnology technology)	Create a new RunType object from the current object with a new technology.
RunData	newType(DataType type)	Create a new RunData object from the current object with a new type.
RunData	newType(String type)	Create a new RunType object from the current object with a new type.
RunData	setLogOnly(boolean logOnly)	Create a new RunType object from the current object with a new log only setting.
RunData	setPartialData(boolean partialData)	Create a new RunType object from the current object with a new partial data setting.
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

RunData

protected RunData()

Constructor for Gson

Method Detail

getRunId

public RunId getRunId()

Get run Id.

Returns:

the run id

getSource

public SequencerSource getSource()

Get the source of the data (e.g. the sequencer name).

Returns:

the source of the data

getType

public DataType getType()

Get the type of the data.

Returns:

the type of the data

getLocation

public DataLocation getLocation()

Get the location of the data.

Returns:

the location of the data

toString

public String toString()

Overrides:

toString in class Object

newRunId

public RunData newRunId(RunId runId)

Create a new RunData object from the current object with a new run Id.

Parameters:

runId - the new run id

Returns:

a new RunData object

newLocation

public RunData newLocation(DataLocation location)

Create a new RunData object from the current object with a new location.

Parameters:

location - the new location

Returns:

a new RunData object

newType

public RunData newType(DataType type)

Create a new RunData object from the current object with a new type.

Parameters:

type - the new type

Returns:

a new RunData object

newCategory

public RunData newCategory(DataType.Category category)

Create a new RunType object from the current object with a new category.

Parameters:

category - the new category

Returns:

a new RunType object

newTechnology

public RunData newTechnology(DataType.SequencingTechnology technology)

Create a new RunType object from the current object with a new technology.

Parameters:

technology - the new technology

Returns:

a new RunType object

newType

public RunData newType(String type)

Create a new RunType object from the current object with a new type.

Parameters:

type - the new type

Returns:

a new RunType object

setPartialData

public RunData setPartialData(boolean partialData)

Create a new RunType object from the current object with a new partial data setting.

Parameters:

partialData - the new partial data value

Returns:

a new RunType object

setLogOnly

public RunData setLogOnly(boolean logOnly)

Create a new RunType object from the current object with a new log only setting.

Parameters:

logOnly - the new log only value

Returns:

a new RunType object