Uses of Class
fr.ens.biologie.genomique.aozan.aozan3.DataStorage
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Packages that use DataStorage Package Description fr.ens.biologie.genomique.aozan.aozan3 fr.ens.biologie.genomique.aozan.aozan3.dataprovider fr.ens.biologie.genomique.aozan.aozan3.recipe -
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Uses of DataStorage in fr.ens.biologie.genomique.aozan.aozan3
Methods in fr.ens.biologie.genomique.aozan.aozan3 that return DataStorage Modifier and Type Method Description static DataStorage
DataStorage. deSerializeFromJson(String json)
Deserialize a DataStorage from JSON.DataStorage
DataLocation. getStorage()
Get the storage of the data location.Methods in fr.ens.biologie.genomique.aozan.aozan3 with parameters of type DataStorage Modifier and Type Method Description static RunData
RunDataFactory. newPartialProcessedIlluminaRunData(DataStorage storage, Path path, SequencerSource source)
Create a new Illumina partial processed run data.static RunData
RunDataFactory. newPartialRawIlluminaRunData(DataStorage storage, Path path, SequencerSource source)
Create a new partial Illumina run data.static RunData
RunDataFactory. newProcessedIlluminaRunData(DataStorage storage, Path path, SequencerSource source)
Create a new Illumina processed run data.static RunData
RunDataFactory. newRawIlluminaRunData(DataStorage storage, Path path, SequencerSource source)
Create a new Illumina run data.Constructors in fr.ens.biologie.genomique.aozan.aozan3 with parameters of type DataStorage Constructor Description DataLocation(DataStorage storage, Path path)
Public constructor. -
Uses of DataStorage in fr.ens.biologie.genomique.aozan.aozan3.dataprovider
Methods in fr.ens.biologie.genomique.aozan.aozan3.dataprovider that return DataStorage Modifier and Type Method Description DataStorage
EmptyRunDataProvider. getDataStorage()
DataStorage
IlluminaProcessedRunDataProvider. getDataStorage()
DataStorage
IlluminaRawRunDataProvider. getDataStorage()
DataStorage
RunDataProvider. getDataStorage()
Get the data storage of used by the provider.Methods in fr.ens.biologie.genomique.aozan.aozan3.dataprovider with parameters of type DataStorage Modifier and Type Method Description void
EmptyRunDataProvider. init(DataStorage storage, Configuration conf, fr.ens.biologie.genomique.kenetre.log.GenericLogger logger)
void
IlluminaProcessedRunDataProvider. init(DataStorage storage, Configuration conf, fr.ens.biologie.genomique.kenetre.log.GenericLogger logger)
void
IlluminaRawRunDataProvider. init(DataStorage storage, Configuration conf, fr.ens.biologie.genomique.kenetre.log.GenericLogger logger)
void
RunDataProvider. init(DataStorage storage, Configuration conf, fr.ens.biologie.genomique.kenetre.log.GenericLogger logger)
Initialize the provider. -
Uses of DataStorage in fr.ens.biologie.genomique.aozan.aozan3.recipe
Methods in fr.ens.biologie.genomique.aozan.aozan3.recipe that return DataStorage Modifier and Type Method Description DataStorage
DataStorageRegistry. get(String name)
Get a data storage from its nameMethods in fr.ens.biologie.genomique.aozan.aozan3.recipe with parameters of type DataStorage Modifier and Type Method Description void
DataStorageRegistry. add(String name, DataStorage storage)
Add a storage to the registryvoid
Recipe. addStorage(String name, DataStorage storage)
Add a storage.
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