Uses of Class
fr.ens.biologie.genomique.aozan.collectors.CollectorConfiguration
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Packages that use CollectorConfiguration Package Description fr.ens.biologie.genomique.aozan.collectors This package defines the collectors which collects data for a run.fr.ens.biologie.genomique.aozan.fastqc This package contains a QCModule for FastQC that list the bad tiles in a fastq file and class used for modify fastqc bytecode, it is necessary with FastQC version 0.10.1.fr.ens.biologie.genomique.aozan.fastqscreen This package contains a module fastqscreen for the contamination detection in each sample of a run. -
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Uses of CollectorConfiguration in fr.ens.biologie.genomique.aozan.collectors
Methods in fr.ens.biologie.genomique.aozan.collectors with parameters of type CollectorConfiguration Modifier and Type Method Description void
AbstractFastqCollector. configure(QC qc, CollectorConfiguration conf)
void
AozanCollector. configure(QC qc, CollectorConfiguration conf)
void
Collector. configure(QC qc, CollectorConfiguration conf)
Configure the collector with the path of the run data.void
DemultiplexingCollector. configure(QC qc, CollectorConfiguration conf)
void
DemultiplexStatsCollector. configure(QC qc, CollectorConfiguration conf)
void
FastQCCollector. configure(QC qc, CollectorConfiguration conf)
void
FastqScreenCollector. configure(QC qc, CollectorConfiguration conf)
void
GlobalStatsCollector. configure(QC qc, CollectorConfiguration conf)
void
MultiQCCollector. configure(QC qc, CollectorConfiguration conf)
void
PrimaryAnalysisMetricsCollector. configure(QC qc, CollectorConfiguration conf)
void
ReadCollector. configure(QC qc, CollectorConfiguration conf)
void
RunInfoCollector. configure(QC qc, CollectorConfiguration conf)
void
SamplesheetCollector. configure(QC qc, CollectorConfiguration conf)
void
StatisticsCollector. configure(QC qc, CollectorConfiguration conf)
void
SubsetFastqCollector. configure(QC qc, CollectorConfiguration conf)
void
UndeterminedIndexesCollector. configure(QC qc, CollectorConfiguration conf)
Constructors in fr.ens.biologie.genomique.aozan.collectors with parameters of type CollectorConfiguration Constructor Description CollectorConfiguration(CollectorConfiguration conf)
Public constructor. -
Uses of CollectorConfiguration in fr.ens.biologie.genomique.aozan.fastqc
Methods in fr.ens.biologie.genomique.aozan.fastqc with parameters of type CollectorConfiguration Modifier and Type Method Description void
OverrepresentedSequencesBlast. configure(CollectorConfiguration conf, String dockerConnectionString)
Configure and check that Blastn can be launched. -
Uses of CollectorConfiguration in fr.ens.biologie.genomique.aozan.fastqscreen
Constructors in fr.ens.biologie.genomique.aozan.fastqscreen with parameters of type CollectorConfiguration Constructor Description FastqScreen(CollectorConfiguration conf)
Public constructor of fastqscreen.
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