Uses of Interface
fr.ens.biologie.genomique.aozan.tests.sample.SampleTest

Packages that use SampleTest

Package	Description
fr.ens.biologie.genomique.aozan.tests.sample	This package contains class of sample tests which defines the collector to launch and creates a report of a quality control.

Uses of SampleTest in fr.ens.biologie.genomique.aozan.tests.sample

Classes in fr.ens.biologie.genomique.aozan.tests.sample that implement SampleTest

Modifier and Type	Class	Description
class	AbstractFastQCSampleTest	This class define an abstract FastQC test.
class	AbstractSampleTest	This class define a abstract sample test.
class	AbstractSimpleSampleTest	This class define a simple sample test.
class	BasePFMeanQualityScoreSampleTest	This class define a percent quality mean score sample test.
class	ClusterRecoveryReportSampleTest	The class adds in the qc report html a link to the report recoverable cluster results for each sample.
class	FastQCAdapterContentSampleTest	This class define a sample test for FastQC per tile sequence quality module.
class	FastQCBasicStatsSampleTest	This class define a sample test for FastQC basic stats module.
class	FastQCDuplicationLevelSampleTest	This class define a sample test for FastQC duplication level module.
class	FastQCKmerContentSampleTest	This class define a sample test for FastQC kmer content module.
class	FastQCNContentSampleTest	This class define a sample test for FastQC N content module.
class	FastQCOverrepresentedSequencesSampleTest	This class define a sample test for FastQC over represented seqs module.
class	FastQCPerBaseQualityScoresSampleTest	This class define a sample test for FastQC per base quality score module.
class	FastQCPerBaseSequenceContentSampleTest	This class define a sample test for FastQC per base sequence content module.
class	FastQCPerSequenceGCContentSampleTest	This class define a sample test for FastQC basic stats module.
class	FastQCPerSequenceQualityScoresSampleTest	This class define a sample test for FastQC per sequence quality scores module.
class	FastQCPerTileSequenceQualitySampleTest	This class define a sample test for FastQC per tile sequence quality module.
class	FastQCSequenceLengthDistributionSampleTest	This class define a sample test for FastQC sequence length distribution module.
class	FastQScreenMappedExceptRefGenomeSampleTest	The class adds in the qc report html one result from fastqScreen for each sample.
class	FastQScreenMappedPercentSampleTest	The class add in the qc report html values from FastqScreen for each sample and for each reference genomes.
class	FastQScreenReportSampleTest	The class adds in the qc report html a link to the report fastqScreen for each sample.
class	GenomeNamesSampleTest	This class define a test to get the genome(s) reference(s) of a sample.
class	InLanePercentSampleTest	This class define a sample percent in lane test.
class	PFClusterCountSampleTest	This class define a passing filter clusters count test for samples.
class	PFPercentSampleTest	This class define a percent passing filter sample test.
class	Q30PercentSampleTest	This class define a percent Q30 sample test.
class	RawClusterCountSampleTest	This class define a raw clusters count test for samples.
class	RecoverablePFClusterCountSampleTest	This class define a recoverable passing filter clusters count test for samples.
class	RecoverablePFClusterPercentSampleTest	This class define a recoverable passing filter clusters percent test for samples.
class	RecoverableRawClusterCountSampleTest	This class define a recoverable passing filter clusters count test for samples.
class	RecoverableRawClusterPercentSampleTest	This class define a recoverable passing filter clusters percent test for samples.